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File dbmills_dir |
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File dbmills_dir |
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String dbsnp |
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String dbsnp |
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String db_mills |
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String db_mills |
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File? regions |
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Int? interval_padding |
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File germline_resource |
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File germline_resource |
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File germline_resource_tbi |
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File germline_resource_tbi |
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db_mills=db_mills, |
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db_mills=db_mills, |
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deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
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deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
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deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
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deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
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regions=regions, |
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interval_padding=interval_padding, |
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docker=docker_sentieon, |
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docker=docker_sentieon, |
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cluster_config=cluster_config, |
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cluster_config=cluster_config, |
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disk_size=disk_size, |
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disk_size=disk_size, |
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db_mills=db_mills, |
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db_mills=db_mills, |
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deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
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deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
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deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
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deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
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regions=regions, |
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interval_padding=interval_padding, |
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docker=docker_sentieon, |
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docker=docker_sentieon, |
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cluster_config=cluster_config, |
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cluster_config=cluster_config, |
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disk_size=disk_size, |
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disk_size=disk_size, |
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ref_dir = ref_fasta_dir, |
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ref_dir = ref_fasta_dir, |
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ref_fasta = ref_fasta, |
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ref_fasta = ref_fasta, |
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regions = regions, |
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interval_padding = interval_padding, |
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dbsnp_dir = dbsnp_dir, |
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dbsnp_dir = dbsnp_dir, |
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dbsnp = dbsnp, |
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dbsnp = dbsnp, |
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# excute env |
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# excute env |