更新 'workflow.wdl'

workflow.wdl

@@ -24,8 +24,6 @@ workflow {{ project_name }} {
     File dbmills_dir
     String dbsnp
     String db_mills
-    File? regions
-    Int? interval_padding
 	File germline_resource
 	File germline_resource_tbi
 
@@ -87,8 +85,6 @@ if (normal_in1 != ""){
 				db_mills=db_mills,
 				deduped_bam=SentieonFastqToBam_normal.deduped_bam,
 				deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai,
-				regions=regions,
-				interval_padding=interval_padding,
 				docker=docker_sentieon,
 				cluster_config=cluster_config,
 				disk_size=disk_size,
@@ -140,8 +136,6 @@ if (tumor_in1 != ""){
 				db_mills=db_mills,
 				deduped_bam=SentieonFastqToBam_normal.deduped_bam,
 				deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai,
-				regions=regions,
-				interval_padding=interval_padding,
 				docker=docker_sentieon,
 				cluster_config=cluster_config,
 				disk_size=disk_size,
@@ -185,8 +179,6 @@ call TNscope.sentieon_TNscope as sentieon_TNscope{
 
 		ref_dir = ref_fasta_dir,
 		ref_fasta = ref_fasta,
-		regions = regions,
-		interval_padding = interval_padding,
 		dbsnp_dir = dbsnp_dir,
 		dbsnp = dbsnp,
 		# excute env