|
|
|
|
|
|
|
|
"tumor_in2":"", |
|
|
"tumor_in2":"", |
|
|
"sample_id":"", |
|
|
"sample_id":"", |
|
|
"Seq_platform":"Illumina", |
|
|
"Seq_platform":"Illumina", |
|
|
"ref_fasta":"", |
|
|
|
|
|
"ref_fasta_dir":"", |
|
|
|
|
|
|
|
|
"ref_fasta":"GRCh38.d1.vd1.fa", |
|
|
|
|
|
"ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
|
|
"docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1", |
|
|
"docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1", |
|
|
"docker_sentieon":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05", |
|
|
"docker_sentieon":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05", |
|
|
"docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0", |
|
|
"docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0", |
|
|
|
|
|
|
|
|
"docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10", |
|
|
"docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10", |
|
|
"SENTIEON_LICENSE":"172.25.2.5:8990", |
|
|
"SENTIEON_LICENSE":"172.25.2.5:8990", |
|
|
"cluster_config":"OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc", |
|
|
"cluster_config":"OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc", |
|
|
"disk_size":500, |
|
|
|
|
|
|
|
|
"disk_size":"500", |
|
|
"fastqc":false, |
|
|
"fastqc":false, |
|
|
"annot_gff":"oss://hcc1395/reference_genome/gencode.v36.annotation.gff", |
|
|
"annot_gff":"oss://hcc1395/reference_genome/gencode.v36.annotation.gff", |
|
|
"dbsnp_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
|
|
"dbsnp_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |