|
|
|
|
|
|
|
|
ref_fasta=ref_fasta, |
|
|
ref_fasta=ref_fasta, |
|
|
dbsnp=dbsnp, |
|
|
dbsnp=dbsnp, |
|
|
db_mills=db_mills, |
|
|
db_mills=db_mills, |
|
|
deduped_bam=Sentieon_BQSR_normal.deduped_bam, |
|
|
|
|
|
deduped_bam_index=Sentieon_BQSR_normal.deduped_bam_bai, |
|
|
|
|
|
|
|
|
deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
|
|
|
|
|
deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
|
|
regions=regions, |
|
|
regions=regions, |
|
|
interval_padding=interval_padding, |
|
|
interval_padding=interval_padding, |
|
|
docker=docker_sentieon, |
|
|
docker=docker_sentieon, |
|
|
|
|
|
|
|
|
ref_fasta=ref_fasta, |
|
|
ref_fasta=ref_fasta, |
|
|
dbsnp=dbsnp, |
|
|
dbsnp=dbsnp, |
|
|
db_mills=db_mills, |
|
|
db_mills=db_mills, |
|
|
deduped_bam=Sentieon_BQSR_tumor.deduped_bam, |
|
|
|
|
|
deduped_bam_index=Sentieon_BQSR_tumor.deduped_bam_bai, |
|
|
|
|
|
|
|
|
deduped_bam=SentieonFastqToBam_normal.deduped_bam, |
|
|
|
|
|
deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, |
|
|
regions=regions, |
|
|
regions=regions, |
|
|
interval_padding=interval_padding, |
|
|
interval_padding=interval_padding, |
|
|
docker=docker_sentieon, |
|
|
docker=docker_sentieon, |