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workflow.wdl
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| @@ -98,8 +98,8 @@ if (normal_in1 != ""){ | |||
| ref_fasta=ref_fasta, | |||
| dbsnp=dbsnp, | |||
| db_mills=db_mills, | |||
| deduped_bam=Sentieon_BQSR_normal.deduped_bam, | |||
| deduped_bam_index=Sentieon_BQSR_normal.deduped_bam_bai, | |||
| deduped_bam=SentieonFastqToBam_normal.deduped_bam, | |||
| deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, | |||
| regions=regions, | |||
| interval_padding=interval_padding, | |||
| docker=docker_sentieon, | |||
| @@ -167,8 +167,8 @@ if (tumor_in1 != ""){ | |||
| ref_fasta=ref_fasta, | |||
| dbsnp=dbsnp, | |||
| db_mills=db_mills, | |||
| deduped_bam=Sentieon_BQSR_tumor.deduped_bam, | |||
| deduped_bam_index=Sentieon_BQSR_tumor.deduped_bam_bai, | |||
| deduped_bam=SentieonFastqToBam_normal.deduped_bam, | |||
| deduped_bam_index=SentieonFastqToBam_normal.deduped_bam_bai, | |||
| regions=regions, | |||
| interval_padding=interval_padding, | |||
| docker=docker_sentieon, | |||
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