更新 'tasks/bcftools_concat.wdl'

tasks/bcftools_concat.wdl

@@ -15,6 +15,7 @@ task bcftools {
     nt=$(nproc)
     
     bcftools concat -a ${vcf_indels} ${vcf_snvs} -Oz -o ${sample_id}_stralka.vcf.gz
+    bcftools index -t ${sample_id}_stralka.vcf.gz
 
   >>>
   
@@ -26,6 +27,7 @@ task bcftools {
   }
   
   output {
-    File norm_vcf = "${sample_id}_stralka.vcf.gz"
+    File concat_vcf = "${sample_id}_stralka.vcf.gz"
+    File concat_vcf_index = "${sample_id}_stralka.vcf.gz.tbi"
   }
 }