@@ -234,16 +234,6 @@ call bcftools_concat.bcftools as bcftools_concat{ | |||
} | |||
call bcftools.bcftools as strelka_bcftools { | |||
input: | |||
vcf=bcftools_concat.concat_vcf, | |||
fasta=ref_fasta, | |||
ref_dir=ref_fasta_dir, | |||
docker=docker_bcftools, | |||
cluster_config="OnDemand bcs.ps.g.large img-ubuntu-vpc", | |||
disk_size=disk_size | |||
} | |||
if (Annovar){ | |||
call annovar.ANNOVAR as TNseq_ANNOVAR { | |||
input: |