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@@ -3,7 +3,7 @@ |
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"ref_fasta":"GRCh38.d1.vd1.fa", |
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"ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/", |
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"docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1", |
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"docker_sentieon":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05", |
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"docker_sentieon":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05", |
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"docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0", |
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"docker_manta":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/manta:v1.6.0", |
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"docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10", |
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@@ -28,6 +28,7 @@ |
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"docker_MSIsensor":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/msisensor-pro:1.2.0", |
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"hg38_CDS":"oss://hcc1395/reference_genome/TMB_dir/genecode.v36.CDS_merged.bed", |
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"docker_tmb":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/tmb:1.1.0", |
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"AF_filter":true |
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"AF_filter":true, |
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"ref_bed":"GRCh38.bed.gz" |
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} |