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tasks/TNseq.wdl
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| --contamination ${sample_id}.contamination \ | --contamination ${sample_id}.contamination \ | ||||
| --tumor_segments ${sample_id}.contamination.segments \ | --tumor_segments ${sample_id}.contamination.segments \ | ||||
| --orientation_priors ${sample_id}.orientation \ | --orientation_priors ${sample_id}.orientation \ | ||||
| ${sample_id}.bwa_TNseq.vcf | |||||
| ${sample_id}.TNseq.vcf | |||||
| >>> | >>> | ||||
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