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tasks/qualimap.wdl
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| @@ -14,7 +14,7 @@ task qualimap{ | |||
| set -o pipefail | |||
| set -exo | |||
| nt=$(nproc) | |||
| /opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -outdir ${out_dir} --java-mem-size=60G | |||
| /opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -nr 500 -nw 1500 -outdir ${out_dir} --java-mem-size=60G | |||
| tar -zcvf ${out_dir}.tar ${out_dir} | |||
| >>> | |||
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