} | } | ||||
output{ | output{ | ||||
File somatic_vcf = "${sample}.Manta.somaticSV.vcf.gz" | |||||
File? germline_vcf = "${sample}.Manta.germlineSV.vcf.gz" | |||||
File somatic_vcf = "${sample_id}.Manta.somaticSV.vcf.gz" | |||||
File? germline_vcf = "${sample_id}.Manta.germlineSV.vcf.gz" | |||||
} | } | ||||
} | } |