@@ -49,7 +49,7 @@ task manta_calling{ | |||
} | |||
output{ | |||
File somatic_vcf = "${sample}.Manta.somaticSV.vcf.gz" | |||
File? germline_vcf = "${sample}.Manta.germlineSV.vcf.gz" | |||
File somatic_vcf = "${sample_id}.Manta.somaticSV.vcf.gz" | |||
File? germline_vcf = "${sample_id}.Manta.germlineSV.vcf.gz" | |||
} | |||
} |