call AnnotSV.AnnotSV as manta_AnnotSV{ | call AnnotSV.AnnotSV as manta_AnnotSV{ | ||||
input: | input: | ||||
sample=sample_id, | sample=sample_id, | ||||
somatic_vcf= manta_calling_SV.manta_indel_vcf, | |||||
somatic_vcf= manta_calling_SV.somatic_vcf, | |||||
germline_vcf = manta_calling_SV.germline_vcf, | |||||
annotsv_database=annotsv_database, | annotsv_database=annotsv_database, | ||||
docker=docker_annotsv, | docker=docker_annotsv, | ||||
cluster_config=cluster_config, | cluster_config=cluster_config, |