|
|
|
|
|
|
|
|
bam_bai=SentieonFastqToBam_normal.deduped_bam_bai, |
|
|
bam_bai=SentieonFastqToBam_normal.deduped_bam_bai, |
|
|
annot_gff=annot_gff, |
|
|
annot_gff=annot_gff, |
|
|
docker=docker_qualimap, |
|
|
docker=docker_qualimap, |
|
|
cluster_config=cluster_config, |
|
|
|
|
|
|
|
|
cluster_config="OnDemand bcs.ps.g.6xlarge img-ubuntu-vpc", |
|
|
disk_size=disk_size |
|
|
disk_size=disk_size |
|
|
} |
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
bam_bai=SentieonFastqToBam_tumor.deduped_bam_bai, |
|
|
bam_bai=SentieonFastqToBam_tumor.deduped_bam_bai, |
|
|
annot_gff=annot_gff, |
|
|
annot_gff=annot_gff, |
|
|
docker=docker_qualimap, |
|
|
docker=docker_qualimap, |
|
|
cluster_config=cluster_config, |
|
|
|
|
|
|
|
|
cluster_config="OnDemand bcs.ps.g.6xlarge img-ubuntu-vpc", |
|
|
disk_size=disk_size |
|
|
disk_size=disk_size |
|
|
} |
|
|
} |
|
|
|
|
|
|