@@ -14,7 +14,7 @@ task qualimap{ | |||
set -o pipefail | |||
set -exo | |||
nt=$(nproc) | |||
/opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -outdir ${out_dir} --java-mem-size=32G | |||
/opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -nr 500 -nw 1500 -outdir ${out_dir} --java-mem-size=64G | |||
tar -zcvf ${out_dir}.tar ${out_dir} | |||
>>> | |||