更新 'tasks/delly.wdl'

tasks/delly.wdl

@@ -12,6 +12,12 @@ task delly{
     String disk_size
 
     command<<<
+    set -o pipefail
+    set -e
+    nt=$(nproc)
+    make PARALLEL=1 -B /home/delly
+    export OMP_NUM_THREADS=$nt
+    
     /home/delly call -o ${sample}_delly.bcf \
     -g ${ref_dir}/${fasta} \
     ${tumor_bam} ${normal_bam}