更新 'tasks/CNVkit.wdl' · b80d54d7c7 - Choppy for Reproducible Omics Pipeline

更新 'tasks/CNVkit.wdl'

master

meng 2 years ago

parent

5b16ccb514

commit

b80d54d7c7

1 changed files with 1 additions and 4 deletions

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tasks/CNVkit.wdlView File
								
															        #gain and loss
															
															        #gain and loss
														
															        cat ${sample}.call.cns | awk -v OFS='\t' '{ if ($6 > 2) print $0, "gain"; else if ($6 < 2) print $0, "loss"; else print $0 }' > ${sample}.call.cns.bed
															
															        cat ${sample}.call.cns > ${sample}.call.cns.bed
														
															        ls ./
															
															        tar cvf ${sample}.tar ${sample}*
															
															        tar cvf ${sample}.tar ${sample}*
														
															    >>>
															
															    >>>