更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -104,12 +104,9 @@ task cnvkit{
        
          
         #gain and loss
-        cat ${sample}.call.cns | awk -v OFS='\t' '{ if ($6 > 2) print $0, "gain"; else if ($6 < 2) print $0, "loss"; else print $0 }' > ${sample}.call.cns.bed
-                  
+        cat ${sample}.call.cns > ${sample}.call.cns.bed
                 
 
-        ls ./
-
         tar cvf ${sample}.tar ${sample}*
 
     >>>