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File annotsv_database |
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File annotsv_database |
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String docker_annotsv |
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String docker_annotsv |
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String docker_sequenza |
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String docker_sequenza |
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if (defined(normal_bams) && size(normal_bams) > 0) { |
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if (defined(normal_bams) && size(normal_bams) > 0) { |
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call cnvkit_multi.cnvkit_multi as cnvkit_multi{ |
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call cnvkit_multi.cnvkit_multi as cnvkit_multi{ |
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input: |
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input: |
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docker=docker_cnvkit, |
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docker=docker_cnvkit, |
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cluster_config=cluster_config, |
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cluster_config=cluster_config, |
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disk_size=disk_size |
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disk_size=disk_size |
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} |
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}else{ |
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} |
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} else { |
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call cnvkit.cnvkit as cnvkit{ |
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call cnvkit.cnvkit as cnvkit{ |
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input: |
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input: |
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sample_id=sample_id, |
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sample_id=sample_id, |