@@ -1,5 +1,4 @@ | |||
import "./tasks/CNVkit.wdl" as cnvkit | |||
import "./tasks/AnnotSV.wdl" as AnnotSV | |||
workflow {{ project_name }} { | |||
String sample_id | |||
@@ -38,16 +37,5 @@ workflow {{ project_name }} { | |||
disk_size=disk_size | |||
} | |||
#call AnnotSV.AnnotSV as cnvkit_AnnotSV{ | |||
# input: | |||
# sample=sample_id, | |||
# somatic_vcf=cnvkit.cnv_bed, | |||
# annotsv_database=annotsv_database, | |||
# docker=docker_annotsv, | |||
# cluster_config=cluster_config, | |||
# disk_size=disk_size | |||
#} | |||
} |