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workflow.wdl
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| import "./tasks/CNVkit.wdl" as cnvkit | import "./tasks/CNVkit.wdl" as cnvkit | ||||
| import "./tasks/AnnotSV.wdl" as AnnotSV | |||||
| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | String sample_id | ||||
| disk_size=disk_size | disk_size=disk_size | ||||
| } | } | ||||
| #call AnnotSV.AnnotSV as cnvkit_AnnotSV{ | |||||
| # input: | |||||
| # sample=sample_id, | |||||
| # somatic_vcf=cnvkit.cnv_bed, | |||||
| # annotsv_database=annotsv_database, | |||||
| # docker=docker_annotsv, | |||||
| # cluster_config=cluster_config, | |||||
| # disk_size=disk_size | |||||
| #} | |||||
| } | } |
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