1 changed files with 3 additions and 0 deletions
+ 3
- 0
workflow.wdl
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| File tumor_bam_bai | File tumor_bam_bai | ||||
| File? normal_bam | File? normal_bam | ||||
| File? normal_bam_bai | File? normal_bam_bai | ||||
| File? VCF | |||||
| Array[File]? inputBams | Array[File]? inputBams | ||||
| Array[File]? inputBamIndexs | Array[File]? inputBamIndexs | ||||
| String docker_cnvkit | String docker_cnvkit | ||||
| tumor_bam_index=tumor_bam_bai, | tumor_bam_index=tumor_bam_bai, | ||||
| normal_bams=inputBams, | normal_bams=inputBams, | ||||
| normal_bam_indexs=inputBamIndexs, | normal_bam_indexs=inputBamIndexs, | ||||
| VCF = VCF, | |||||
| docker=docker_cnvkit, | docker=docker_cnvkit, | ||||
| cluster_config=cluster_config, | cluster_config=cluster_config, | ||||
| disk_size=disk_size | disk_size=disk_size | ||||
| tumor_bam_index=tumor_bam_bai, | tumor_bam_index=tumor_bam_bai, | ||||
| normal_bam=normal_bam, | normal_bam=normal_bam, | ||||
| normal_bam_index=normal_bam_bai, | normal_bam_index=normal_bam_bai, | ||||
| VCF = VCF, | |||||
| docker=docker_cnvkit, | docker=docker_cnvkit, | ||||
| cluster_config=cluster_config, | cluster_config=cluster_config, | ||||
| disk_size=disk_size | disk_size=disk_size |
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