更新 'workflow.wdl'

workflow.wdl

@@ -15,6 +15,7 @@ workflow {{ project_name }} {
     File tumor_bam_bai
     File? normal_bam
     File? normal_bam_bai
+    File? VCF
     Array[File]? inputBams
     Array[File]? inputBamIndexs
     String docker_cnvkit
@@ -36,6 +37,7 @@ workflow {{ project_name }} {
                 tumor_bam_index=tumor_bam_bai,
                 normal_bams=inputBams,
                 normal_bam_indexs=inputBamIndexs,
+                VCF = VCF,
                 docker=docker_cnvkit,
                 cluster_config=cluster_config,
                 disk_size=disk_size
@@ -66,6 +68,7 @@ workflow {{ project_name }} {
                 tumor_bam_index=tumor_bam_bai,
                 normal_bam=normal_bam,
                 normal_bam_index=normal_bam_bai,
+                VCF = VCF,
                 docker=docker_cnvkit,
                 cluster_config=cluster_config,
                 disk_size=disk_size