1 changed files with 6 additions and 6 deletions
+ 6
- 6
workflow.wdl
View File
| @@ -14,10 +14,10 @@ workflow {{ project_name }} { | |||
| File tumor_bam_bai | |||
| File? normal_bam | |||
| File? normal_bam_bai | |||
| File? inputBams | |||
| File? inputBamIndexs | |||
| Array[File]? normal_bams = read_tsv_as_files(inputBams) | |||
| Array[File]? normal_bam_indexs = read_tsv_as_files(inputBamIndexs) | |||
| #File? inputBams | |||
| #File? inputBamIndexs | |||
| Array[File]? inputBams | |||
| Array[File]? inputBamIndexs | |||
| String docker_cnvkit | |||
| String cluster_config | |||
| String disk_size | |||
| @@ -37,8 +37,8 @@ workflow {{ project_name }} { | |||
| tumor_bam_index=tumor_bam_bai, | |||
| normal_bam=normal_bam, | |||
| normal_bam_index=normal_bam_bai, | |||
| normal_bams = normal_bams, | |||
| normal_bam_indexs = normal_bam_indexs, | |||
| normal_bams = inputBams, | |||
| normal_bam_indexs = inputBamIndexs, | |||
| docker=docker_cnvkit, | |||
| cluster_config=cluster_config, | |||
| disk_size=disk_size | |||
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