更新 'workflow.wdl'

workflow.wdl

@@ -14,10 +14,10 @@ workflow {{ project_name }} {
     File tumor_bam_bai
     File? normal_bam
     File? normal_bam_bai
-    File? inputBams
-    File? inputBamIndexs
-    Array[File]? normal_bams = read_tsv_as_files(inputBams)
-    Array[File]? normal_bam_indexs = read_tsv_as_files(inputBamIndexs)
+    #File? inputBams
+    #File? inputBamIndexs
+    Array[File]? inputBams
+    Array[File]? inputBamIndexs
     String docker_cnvkit
     String cluster_config
     String disk_size
@@ -37,8 +37,8 @@ workflow {{ project_name }} {
             tumor_bam_index=tumor_bam_bai,
             normal_bam=normal_bam,
             normal_bam_index=normal_bam_bai,
-            normal_bams = normal_bams,
-            normal_bam_indexs = normal_bam_indexs,
+            normal_bams = inputBams,
+            normal_bam_indexs = inputBamIndexs,
             docker=docker_cnvkit,
             cluster_config=cluster_config,
             disk_size=disk_size