更新 'workflow.wdl'

workflow.wdl

@@ -20,20 +20,20 @@ workflow {{ project_name }} {
     String docker_annotsv
     String docker_sequenza
 
-#    call HRD.HRD as HRD{
-#        input:
-#            sample=sample_id,
-#            fasta=ref_fasta,
-#            ref_dir=ref_fasta_dir,
-#            gc=gc,
-#            normal_bam=normal_bam,
-#            normal_bam_index=normal_bam_bai,
-#            tumor_bam=tumor_bam,
-#            tumor_bam_index=tumor_bam_bai,
-#            docker=docker_sequenza,
-#            cluster_config=cluster_config,
-#            disk_size=disk_size
-#    }
+    call HRD.HRD as HRD{
+        input:
+            sample=sample_id,
+            fasta=ref_fasta,
+            ref_dir=ref_fasta_dir,
+            gc=gc,
+            normal_bam=normal_bam,
+            normal_bam_index=normal_bam_bai,
+            tumor_bam=tumor_bam,
+            tumor_bam_index=tumor_bam_bai,
+            docker=docker_sequenza,
+            cluster_config=cluster_config,
+            disk_size=disk_size
+    }
 
 
     call cnvkit.cnvkit as cnvkit{
@@ -42,7 +42,7 @@ workflow {{ project_name }} {
             ref_dir=ref_fasta_cnvkit,
             fasta=ref_fasta,
             ref_flat=ref_flat,
-            #hrd=HRD.hrd,
+            hrd=HRD.hrd,
             tumor_bam=tumor_bam,
             tumor_bam_index=tumor_bam_bai,
             normal_bam=normal_bam,