更新 'tasks/CNVkit.wdl'

tasks/CNVkit_raw.wdl → tasks/CNVkit.wdl

@@ -30,7 +30,6 @@ task cnvkit{
     
         # Derive each segment's absolute integer copy number, ploidy must be int value
         PURITY=`awk -F'\t' '{print $6}' ${hrd} | sed -n '2p'`
-        #PURITY=3.3
         /root/miniconda2/bin/cnvkit.py segmetrics ${sample}.cnr -s ${sample}.cns --ci -o ${sample}.segmetrics.cns
         /root/miniconda2/bin/cnvkit.py call ${sample}.segmetrics.cns --drop-low-coverage --filter ci -m threshold --purity $PURITY -o ${sample}.call.cns