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tasks/CNVkit.wdl
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| @@ -27,6 +27,7 @@ task cnvkit{ | |||
| --method wgs \ | |||
| --fasta ${ref_dir} \ | |||
| --annotate ${ref_flat} -p $nt \ | |||
| --targets targets.bed \ | |||
| --drop-low-coverage \ | |||
| --output-dir ${sample_id}.reference.cnn | |||
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