更新 'tasks/CNVkit.wdl' · ef9d932ac4 - Choppy for Reproducible Omics Pipeline

更新 'tasks/CNVkit.wdl'

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meng 2 years ago

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ef9d932ac4

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tasks/CNVkit.wdlView File
								
															                  --method wgs \
															
															                  --method wgs \
														
															                  --fasta ${ref_dir} \
															
															                  --fasta ${ref_dir} \
														
															                  --annotate ${ref_flat} -p $nt \
															
															                  --annotate ${ref_flat} -p $nt \
														
															                  --targets targets.bed \
														
															                  --drop-low-coverage \
															
															                  --drop-low-coverage \
														
															                  --output-dir ${sample_id}.reference.cnn
															
															                  --output-dir ${sample_id}.reference.cnn