@@ -1,6 +1,6 @@ | |||
import "./tasks/CNVkit.wdl" as cnvkit | |||
import "./tasks/AnnotSV.wdl" as AnnotSV | |||
import "./tasks/HRD.wdl" as HRD | |||
import "./tasks/sequenza.wdl" as sequenza | |||
workflow {{ project_name }} { | |||
String sample_id | |||
@@ -21,7 +21,7 @@ workflow {{ project_name }} { | |||
String docker_annotsv | |||
String docker_sequenza | |||
call HRD.HRD as HRD{ | |||
call sequenza.sequenza as HRD{ | |||
input: | |||
sample=sample_id, | |||
fasta=ref_fasta, |