1 changed files with 2 additions and 2 deletions
+ 2
- 2
workflow.wdl
View File
| import "./tasks/CNVkit.wdl" as cnvkit | import "./tasks/CNVkit.wdl" as cnvkit | ||||
| import "./tasks/AnnotSV.wdl" as AnnotSV | import "./tasks/AnnotSV.wdl" as AnnotSV | ||||
| import "./tasks/HRD.wdl" as HRD | |||||
| import "./tasks/sequenza.wdl" as sequenza | |||||
| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | String sample_id | ||||
| String docker_annotsv | String docker_annotsv | ||||
| String docker_sequenza | String docker_sequenza | ||||
| call HRD.HRD as HRD{ | |||||
| call sequenza.sequenza as HRD{ | |||||
| input: | input: | ||||
| sample=sample_id, | sample=sample_id, | ||||
| fasta=ref_fasta, | fasta=ref_fasta, |
Loading…