@@ -29,7 +29,7 @@ task HRD { | |||
rm ${sample}_*.seqz.gz; rm ${sample}_*.seqz.gz.tbi | |||
# seqz_binning: WES: 50; WGS: 200 | |||
sequenza-utils seqz_binning --seqz $seqz -w 50 -o $small | |||
sequenza-utils seqz_binning --seqz $seqz -w 200 -o $small | |||
# analysis in r | |||
Rscript /home/sequenza/sequenza.r '.' ${sample} |