更新 'tasks/HRD.wdl' · df7559f846 - Choppy for Reproducible Omics Pipeline

更新 'tasks/HRD.wdl'

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meng 2 years ago

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2bbc21d042

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df7559f846

1 changed files with 1 additions and 1 deletions

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tasks/HRD.wdlView File
								
															    rm ${sample}_*.seqz.gz; rm ${sample}_*.seqz.gz.tbi
															
															    rm ${sample}_*.seqz.gz; rm ${sample}_*.seqz.gz.tbi
														
															    # seqz_binning: WES: 50; WGS: 200
															
															    # seqz_binning: WES: 50; WGS: 200
														
															    sequenza-utils seqz_binning --seqz $seqz -w 50 -o $small
															
															    sequenza-utils seqz_binning --seqz $seqz -w 200 -o $small
														
															    # analysis in r
															
															    # analysis in r
														
															    Rscript /home/sequenza/sequenza.r '.' ${sample}
															
															    Rscript /home/sequenza/sequenza.r '.' ${sample}