更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -33,10 +33,10 @@ task cnvkit{
        ls ./
        
         
-       #/root/miniconda2/bin/cnvkit.py batch  ${tumor_bam} \
-       #           -r ${sample}.reference.cnn \
-       #           --output-dir ${sample}.sampleid.cns \
-       #           -p $nt
+       /root/miniconda2/bin/cnvkit.py batch  ${tumor_bam} \
+                  -r ${sample}.reference.cnn/reference.cnn \
+                  --output-dir ${sample}.sampleid.cns \
+                  -p $nt
                   
        #ls ./
        #/root/miniconda2/bin/cnvkit.py call ${sample}.sampleid.cns \