1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/CNVkit.wdl
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| ls ./ | ls ./ | ||||
| #/root/miniconda2/bin/cnvkit.py batch ${tumor_bam} \ | |||||
| # -r ${sample}.reference.cnn \ | |||||
| # --output-dir ${sample}.sampleid.cns \ | |||||
| # -p $nt | |||||
| /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} \ | |||||
| -r ${sample}.reference.cnn/reference.cnn \ | |||||
| --output-dir ${sample}.sampleid.cns \ | |||||
| -p $nt | |||||
| #ls ./ | #ls ./ | ||||
| #/root/miniconda2/bin/cnvkit.py call ${sample}.sampleid.cns \ | #/root/miniconda2/bin/cnvkit.py call ${sample}.sampleid.cns \ |
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