@@ -8,6 +8,7 @@ workflow {{ project_name }} { | |||
File ref_fasta_cnvkit | |||
String ref_fasta | |||
File ref_flat | |||
File bed_file | |||
File gc | |||
File tumor_bam | |||
File tumor_bam_bai | |||
@@ -43,6 +44,7 @@ workflow {{ project_name }} { | |||
fasta=ref_fasta, | |||
ref_flat=ref_flat, | |||
#hrd=HRD.hrd, | |||
bed_file=bed_file, | |||
tumor_bam=tumor_bam, | |||
tumor_bam_index=tumor_bam_bai, | |||
normal_bam=normal_bam, |