@@ -5,6 +5,7 @@ import "./tasks/HRD.wdl" as HRD | |||
workflow {{ project_name }} { | |||
String sample_id | |||
File ref_fasta_dir | |||
File ref_fasta_cnvkit | |||
String ref_fasta | |||
File ref_flat | |||
File gc | |||
@@ -38,7 +39,7 @@ workflow {{ project_name }} { | |||
call cnvkit.cnvkit as cnvkit{ | |||
input: | |||
sample_id=sample_id, | |||
ref_dir=ref_fasta_dir, | |||
ref_dir=ref_fasta_cnvkit, | |||
fasta=ref_fasta, | |||
ref_flat=ref_flat, | |||
#hrd=HRD.hrd, |