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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | String sample_id | ||||
| File ref_fasta_dir | File ref_fasta_dir | ||||
| File ref_fasta_cnvkit | |||||
| String ref_fasta | String ref_fasta | ||||
| File ref_flat | File ref_flat | ||||
| File gc | File gc | ||||
| call cnvkit.cnvkit as cnvkit{ | call cnvkit.cnvkit as cnvkit{ | ||||
| input: | input: | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| ref_dir=ref_fasta_dir, | |||||
| ref_dir=ref_fasta_cnvkit, | |||||
| fasta=ref_fasta, | fasta=ref_fasta, | ||||
| ref_flat=ref_flat, | ref_flat=ref_flat, | ||||
| #hrd=HRD.hrd, | #hrd=HRD.hrd, |
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