更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -22,7 +22,7 @@ task cnvkit{
         
         echo ${sample}
 
-        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir} --annotate ${ref_flat} -p $nt
+        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir}/${fasta} --annotate ${ref_flat} -p $nt
 
                   
         # Check noise