task fastp { | task fastp { | ||||
File read | File read | ||||
String sample_id=sub(basename(read1), "\\.(fastq|fq)\\.gz$", "") | |||||
String sample_id=sub(basename(read), "\\.(fastq|fq)\\.gz$", "") | |||||
String adapter_sequence | String adapter_sequence | ||||
String adapter_sequence_r2 | String adapter_sequence_r2 | ||||
String docker | String docker |