......

workflow.wdl

@@ -122,13 +122,14 @@ workflow {{ project_name }} {
 		disk_size = disk_size,
 		insert_size = insert_size
 	}
-			
-	call qualimapBAMqc.qualimapBAMqc as qualimapBAMqc {
+
+	call qualimapRNAseq.qualimapRNAseq as qualimapRNAseq {
 		input:
 		bam = samtools.out_percent,
-		docker = qualimapBAMqc_docker,
-		cluster_config = qualimapBAMqc_cluster_config,
-		disk_size = qualimapBAMqc_disk_size
+		docker = qualimapRNAseq_docker,
+		cluster_config = qualimapRNAseq_cluster_config,
+		disk_size = qualimapRNAseq_disk_size,
+		gtf = gtf
 	}