Zhihui
5 år sedan
2 ändrade filer med 2 tillägg och 0 borttagningar
+ 1
- 0
tasks/qualimapBAMqc.wdl
Visa fil
| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | ||||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||||
| >>> | >>> | ||||
+ 1
- 0
tasks/qualimapRNAseq.wdl
Visa fil
| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /opt/qualimap/qualimap rnaseq -bam ${bam} -outformat HTML -outdir ${bamname}_RNAseq -gtf ${gtf} -pe --java-mem-size=10G | /opt/qualimap/qualimap rnaseq -bam ${bam} -outformat HTML -outdir ${bamname}_RNAseq -gtf ${gtf} -pe --java-mem-size=10G | ||||
| tar -zcvf ${bamname}_RNAseq_qualimap.zip ${bamname}_RNAseq | |||||
| >>> | >>> | ||||
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