Zhihui
4 years ago
2 changed files with 2 additions and 0 deletions
+ 1
- 0
tasks/qualimapBAMqc.wdl
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| @@ -10,6 +10,7 @@ task qualimapBAMqc { | |||
| set -e | |||
| nt=$(nproc) | |||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | |||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||
| >>> | |||
+ 1
- 0
tasks/qualimapRNAseq.wdl
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| @@ -11,6 +11,7 @@ task qualimapRNAseq { | |||
| set -e | |||
| nt=$(nproc) | |||
| /opt/qualimap/qualimap rnaseq -bam ${bam} -outformat HTML -outdir ${bamname}_RNAseq -gtf ${gtf} -pe --java-mem-size=10G | |||
| tar -zcvf ${bamname}_RNAseq_qualimap.zip ${bamname}_RNAseq | |||
| >>> | |||
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