@@ -10,6 +10,8 @@ task ballgown { | |||
mkdir -p /cromwell_root/tmp/${sample_id} | |||
cp -r ${sep=" " ballgown} /cromwell_root/tmp/${sample_id} | |||
ballgown /cromwell_root/tmp/${sample_id} ${sample_id}.txt | |||
sed -i 's/"//g' ${base}.txt | |||
sed -i '1s/FPKM./gene_id\t/g' ${base}.txt | |||
>>> | |||
runtime { |