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tasks/ballgown.wdl
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| mkdir -p /cromwell_root/tmp/${sample_id} | mkdir -p /cromwell_root/tmp/${sample_id} | ||||
| cp -r ${sep=" " ballgown} /cromwell_root/tmp/${sample_id} | cp -r ${sep=" " ballgown} /cromwell_root/tmp/${sample_id} | ||||
| ballgown /cromwell_root/tmp/${sample_id} ${sample_id}.txt | ballgown /cromwell_root/tmp/${sample_id} ${sample_id}.txt | ||||
| sed -i 's/"//g' ${base}.txt | |||||
| sed -i '1s/FPKM./gene_id\t/g' ${base}.txt | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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