@@ -28,6 +28,5 @@ task stringtie { | |||
File covered_transcripts = "${sample_id}.cov.ref.gtf" | |||
File gene_abundance = "${sample_id}.gene.abundance.txt" | |||
Array[File] ballgown = ["ballgown/${sample_id}/${sample_id}.gtf", "ballgown/${sample_id}/e2t.ctab", "ballgown/${sample_id}/e_data.ctab", "ballgown/${sample_id}/i2t.ctab", "ballgown/${sample_id}/i_data.ctab", "ballgown/${sample_id}/t_data.ctab"] | |||
File genecount = "${sample_id}_genecount.csv" | |||
} | |||
} |