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tasks/stringtie.wdl
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| File covered_transcripts = "${sample_id}.cov.ref.gtf" | File covered_transcripts = "${sample_id}.cov.ref.gtf" | ||||
| File gene_abundance = "${sample_id}.gene.abundance.txt" | File gene_abundance = "${sample_id}.gene.abundance.txt" | ||||
| Array[File] ballgown = ["ballgown/${sample_id}/${sample_id}.gtf", "ballgown/${sample_id}/e2t.ctab", "ballgown/${sample_id}/e_data.ctab", "ballgown/${sample_id}/i2t.ctab", "ballgown/${sample_id}/i_data.ctab", "ballgown/${sample_id}/t_data.ctab"] | Array[File] ballgown = ["ballgown/${sample_id}/${sample_id}.gtf", "ballgown/${sample_id}/e2t.ctab", "ballgown/${sample_id}/e_data.ctab", "ballgown/${sample_id}/i2t.ctab", "ballgown/${sample_id}/i_data.ctab", "ballgown/${sample_id}/t_data.ctab"] | ||||
| File genecount = "${sample_id}_genecount.csv" | |||||
| } | } | ||||
| } | } |
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