4 zmienionych plików z 5 dodań i 1 usunięć
+ 2
- 1
tasks/fastp.wdl
Wyświetl plik
| String adapter_sequence_r2 | String adapter_sequence_r2 | ||||
| String docker | String docker | ||||
| String cluster | String cluster | ||||
| String disk_size | |||||
| String umi_loc | String umi_loc | ||||
| Int trim_front1 | Int trim_front1 | ||||
| Int trim_tail1 | Int trim_tail1 | ||||
| docker: docker | docker: docker | ||||
| cluster: cluster | cluster: cluster | ||||
| systemDisk: "cloud_ssd 40" | systemDisk: "cloud_ssd 40" | ||||
| dataDisk: "cloud_ssd 200 /cromwell_root/" | |||||
| dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||||
| } | } | ||||
| output { | output { |
+ 1
- 0
tasks/hisat2.wdl
Wyświetl plik
| String sample_id | String sample_id | ||||
| String docker | String docker | ||||
| String cluster | String cluster | ||||
| String disk_size | |||||
| String pen_intronlen | String pen_intronlen | ||||
| Int pen_cansplice | Int pen_cansplice | ||||
| Int pen_noncansplice | Int pen_noncansplice |
+ 1
- 0
tasks/samtools.wdl
Wyświetl plik
| String ins_size = sample_id + ".ins_size" | String ins_size = sample_id + ".ins_size" | ||||
| String docker | String docker | ||||
| String cluster | String cluster | ||||
| String disk_size | |||||
| Int insert_size | Int insert_size | ||||
| command <<< | command <<< |
+ 1
- 0
tasks/stringtie.wdl
Wyświetl plik
| String docker | String docker | ||||
| String sample_id | String sample_id | ||||
| String cluster | String cluster | ||||
| String disk_size | |||||
| Int minimum_length_allowed_for_the_predicted_transcripts | Int minimum_length_allowed_for_the_predicted_transcripts | ||||
| Int Junctions_no_spliced_reads | Int Junctions_no_spliced_reads | ||||
| Float minimum_isoform_abundance | Float minimum_isoform_abundance |
Ładowanie…