......

defaults

@@ -24,7 +24,7 @@
     "fasta": "GRCh38.d1.vd1.fa",
     "pen_cansplice":"0",
     "pen_noncansplice":"3",
-    "pen_intronlen":"1",
+    "pen_intronlen":"G,-8,1",
     "min_intronlen":"30",
     "max_intronlen":"500000",
     "maxins":"500",
@@ -52,7 +52,7 @@
     "fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
     "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
     "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
-    "fastqscreen_disk_size": "100",
+    "fastqscreen_disk_size": "200",
     "ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
     "multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
     "multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

workflow.wdl

@@ -101,7 +101,7 @@ workflow {{ project_name }} {
 		read2=fastp.Trim_R2,
 		docker=fastqc_docker,
 		cluster_config=fastqc_cluster_config,
-		disk_size=fastqc_cluster_config
+		disk_size=fastqc_disk_size
 		}
 
 		call fastqscreen.fastq_screen as fastqscreen {