Zhihui 4 lat temu
rodzic
commit
941698562e
2 zmienionych plików z 3 dodań i 3 usunięć
  1. +2
    -2
      defaults
  2. +1
    -1
      workflow.wdl

+ 2
- 2
defaults Wyświetl plik

"fasta": "GRCh38.d1.vd1.fa", "fasta": "GRCh38.d1.vd1.fa",
"pen_cansplice":"0", "pen_cansplice":"0",
"pen_noncansplice":"3", "pen_noncansplice":"3",
"pen_intronlen":"1",
"pen_intronlen":"G,-8,1",
"min_intronlen":"30", "min_intronlen":"30",
"max_intronlen":"500000", "max_intronlen":"500000",
"maxins":"500", "maxins":"500",
"fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", "fastqscreen_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/", "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
"fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf", "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
"fastqscreen_disk_size": "100",
"fastqscreen_disk_size": "200",
"ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/", "ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
"multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", "multiqc_cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", "multiqc_docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

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workflow.wdl Wyświetl plik

read2=fastp.Trim_R2, read2=fastp.Trim_R2,
docker=fastqc_docker, docker=fastqc_docker,
cluster_config=fastqc_cluster_config, cluster_config=fastqc_cluster_config,
disk_size=fastqc_cluster_config
disk_size=fastqc_disk_size
} }


call fastqscreen.fastq_screen as fastqscreen { call fastqscreen.fastq_screen as fastqscreen {

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